The Botanic Garden Berlin develops and maintains a variety of scientific databases and information systems. These include local databases for the Botanic Garden’s living and herbarium collections, national and international taxonomic checklist databases as well as portals to distributed primary biodiversity data providers. All resources are publicly accessible via World Wide Web user interfaces.

• Accessions in the botanical garden
• AlgaTerra - Information System on terrestrial and limnic Micro Algae
• BioCASE portal for BGBM collections
• BioCASE portal for European biodiversity
• BioCASE portal for German phytodiversity
• Cactaceae
• Campanula Dataportal
• Caryophyllales Portal
• Cichorieae Portal
• Dendroflora de El Salvador
• DERMBASE, names of Dermateaceae (Ascomycetes)
• Digital Specimen Images
• EDIT Specimen and Observation Explorer for Taxonomists
• Euro+Med Plantbase
• Flora de Bogotá
• Flora de la República de Cuba
• Flora of Cuba database (specimens)
• Flora of Cyprus – A Dynamic Checklist
• GBIF.DE Algae & Protozoa data portal
• German Virtual Herbarium
• Global Genome Biodiversity Network (GGBN)
• IAPT Registration of Plant Names Trial
• IOPI Global Plant Checklist Prototype
• LICHCOL database of lichen herbarium specimens
• Med-Checklist online
• Names in Current Use for Extant Plant Genera (NCU-3e)
• Nepenthaceae
• Standardliste der Farn- und Blütenpflanzen Deutschlands
• The genus Ziziphus Mill. (Rhamnaceae) in the Caribbean
• The Spermatophyta of Cuba - A Preliminary Checklist
• Vascular Plants Checklist of Greece
• Virtuelles Herbarium Deutschland